Index

_

__call__() (ontoaligner.pipeline.OntoAlignerPipeline method) __init__() (ontoaligner.aligner.ensemble.ensemble.EnsembleLearningAligner method) (ontoaligner.aligner.ensemble.voting.reciprocal_rank_fusion.ReciprocalRankFusionVoting method) (ontoaligner.aligner.ensemble.voting.weighted.WeightedVoting method) (ontoaligner.aligner.flora.flora.FLORAAligner method) (ontoaligner.aligner.flora.flora.FLORARDFWriter method) (ontoaligner.aligner.olala.olala.OLaLaAligner method) (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) (ontoaligner.aligner.propmatch.propmatch.SoftTfIdf method) (ontoaligner.pipeline.AlignerPipeline method)

A

AdaRetrieval (class in ontoaligner.aligner.retrieval.models) add_prediction() (ontoaligner.aligner.olala.retrieval.OLaLaSBERTRetrieval method)

AlignerPipeline (class in ontoaligner.pipeline) alignments (ontoaligner.base.dataset.OMDataset attribute), [1] AutoModelDecoderLLM (class in ontoaligner.aligner.llm.models)

B

BaseAlignmentsParser (class in ontoaligner.base.ontology) BaseEncoder (class in ontoaligner.base.encoder) BaseOMModel (class in ontoaligner.base.model) BaseOntologyParser (class in ontoaligner.base.ontology) BaseVoting (class in ontoaligner.aligner.ensemble.voting.base) bilateral_max_assign() (in module ontoaligner.aligner.flora.fuzzy) BM25Retrieval (class in ontoaligner.aligner.retrieval.models)

bootstrap_algo() (in module ontoaligner.aligner.flora.fuzzy) bootstraping() (ontoaligner.aligner.flora.flora.FLORAAligner method) BordaCountVoting (class in ontoaligner.aligner.ensemble.voting.borda) BoxEAligner (class in ontoaligner.aligner.graph.models) build_outputdict() (in module ontoaligner.postprocess.util) build_text_index() (ontoaligner.aligner.olala.highprecision_matcher.OLaLaHighPrecisionMatcher method) build_tf_models() (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method)

C

calculate_intersection() (in module ontoaligner.utils.metrics) collate_fn() (ontoaligner.aligner.olala.dataset.OLaLaLLMDataset method) collect() (ontoaligner.base.dataset.OMDataset method) combine() (ontoaligner.aligner.ensemble.voting.average.ScoreAverageVoting method) (ontoaligner.aligner.ensemble.voting.base.BaseVoting method) (ontoaligner.aligner.ensemble.voting.borda.BordaCountVoting method) (ontoaligner.aligner.ensemble.voting.condorce.CondorcetVoting method) (ontoaligner.aligner.ensemble.voting.reciprocal_rank_fusion.ReciprocalRankFusionVoting method) (ontoaligner.aligner.ensemble.voting.weighted.WeightedVoting method)

CompGCNAligner (class in ontoaligner.aligner.graph.models) ComplExAligner (class in ontoaligner.aligner.graph.models) compute_functionalities() (in module ontoaligner.aligner.flora.fuzzy) compute_quasi_eqrel() (in module ontoaligner.aligner.flora.fuzzy) CondorcetVoting (class in ontoaligner.aligner.ensemble.voting.condorce) confidence_score_based_filtering() (in module ontoaligner.postprocess.util) confidence_score_ratio_based_filtering() (in module ontoaligner.postprocess.util) ConvEAligner (class in ontoaligner.aligner.graph.models) cosine_similarity() (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) CrossEAligner (class in ontoaligner.aligner.graph.models)

D

DistMultAligner (class in ontoaligner.aligner.graph.models)

duplicate_removals() (ontoaligner.base.ontology.BaseOntologyParser method)

E

EnsembleLearningAligner (class in ontoaligner.aligner.ensemble.ensemble) entity_1 (ontoaligner.base.ontology.BaseAlignmentsParser attribute) entity_2 (ontoaligner.base.ontology.BaseAlignmentsParser attribute) estimate_similarity() (ontoaligner.aligner.retrieval.models.BM25Retrieval method) (ontoaligner.aligner.retrieval.models.TFIDFRetrieval method)

eval_preprocess_ir_outputs() (in module ontoaligner.postprocess.util) evaluation_report() (in module ontoaligner.utils.metrics) extract_data() (ontoaligner.base.ontology.BaseAlignmentsParser method) (ontoaligner.base.ontology.BaseOntologyParser method)

F

f1_measurement() (in module ontoaligner.utils.metrics) FalconLLMAdaRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) FalconLLMAdaRetrieverICVRAG (class in ontoaligner.aligner.icv.models) FalconLLMAdaRetrieverRAG (class in ontoaligner.aligner.rag.models) FalconLLMBERTRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) FalconLLMBERTRetrieverICVRAG (class in ontoaligner.aligner.icv.models) FalconLLMBERTRetrieverRAG (class in ontoaligner.aligner.rag.models) fill_one_sample() (ontoaligner.aligner.olala.dataset.OLaLaLLMDataset method) filter_adjectives() (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) filter_n_to_m() (ontoaligner.aligner.olala.highprecision_matcher.OLaLaHighPrecisionMatcher method) filter_topk_per_resource() (ontoaligner.aligner.olala.retrieval.OLaLaSBERTRetrieval method)

first_iteration() (in module ontoaligner.aligner.flora.fuzzy) fit() (ontoaligner.aligner.retrieval.models.AdaRetrieval method) (ontoaligner.aligner.retrieval.models.BM25Retrieval method) (ontoaligner.aligner.retrieval.models.TFIDFRetrieval method) (ontoaligner.postprocess.label_mapper.LabelMapper method) (ontoaligner.postprocess.label_mapper.SBERTLabelMapper method) (ontoaligner.postprocess.label_mapper.TFIDFLabelMapper method) FlanT5LEncoderDecoderLM (class in ontoaligner.aligner.llm.models) FLORAAligner (class in ontoaligner.aligner.flora.flora) FLORARDFWriter (class in ontoaligner.aligner.flora.flora) functionalities() (ontoaligner.aligner.flora.flora.FLORAAligner method)

G

generate() (ontoaligner.aligner.ensemble.ensemble.EnsembleLearningAligner method) (ontoaligner.aligner.flora.flora.FLORAAligner method) (ontoaligner.aligner.olala.highprecision_matcher.OLaLaHighPrecisionMatcher method) (ontoaligner.aligner.olala.olala.OLaLaAligner method) (ontoaligner.aligner.olala.retrieval.OLaLaSBERTRetrieval method) (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) (ontoaligner.base.model.BaseOMModel method) (ontoaligner.pipeline.AlignerPipeline method) get_childrens() (ontoaligner.base.ontology.BaseOntologyParser method) get_comments() (ontoaligner.base.ontology.BaseOntologyParser method) get_core_concept() (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) get_document_similarity() (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) get_encoder_info() (ontoaligner.base.encoder.BaseEncoder method) get_iri() (ontoaligner.base.ontology.BaseOntologyParser method) get_label() (ontoaligner.base.ontology.BaseOntologyParser method) get_name() (ontoaligner.base.ontology.BaseOntologyParser method) get_owl_classes() (ontoaligner.base.ontology.BaseOntologyParser method) get_owl_items() (ontoaligner.base.ontology.BaseOntologyParser method)

get_parents() (ontoaligner.base.ontology.BaseOntologyParser method) get_predicate2super_predicate() (ontoaligner.aligner.flora.flora.FLORAAligner method) get_raw_score() (ontoaligner.aligner.propmatch.propmatch.SoftTfIdf method) get_same_as_scores() (ontoaligner.aligner.flora.flora.FLORAAligner method) get_string_representations() (ontoaligner.aligner.olala.highprecision_matcher.OLaLaHighPrecisionMatcher method) get_synonyms() (ontoaligner.base.ontology.BaseOntologyParser method) get_text_examples() (ontoaligner.aligner.olala.retrieval.OLaLaSBERTRetrieval method) get_voting_info() (ontoaligner.aligner.ensemble.voting.average.ScoreAverageVoting method) (ontoaligner.aligner.ensemble.voting.base.BaseVoting method) (ontoaligner.aligner.ensemble.voting.borda.BordaCountVoting method) (ontoaligner.aligner.ensemble.voting.condorce.CondorcetVoting method) (ontoaligner.aligner.ensemble.voting.reciprocal_rank_fusion.ReciprocalRankFusionVoting method) (ontoaligner.aligner.ensemble.voting.weighted.WeightedVoting method) GPTOpenAILLM (class in ontoaligner.aligner.llm.models) GPTOpenAILLMAdaRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) GPTOpenAILLMAdaRetrieverRAG (class in ontoaligner.aligner.rag.models) GPTOpenAILLMBERTRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) GPTOpenAILLMBERTRetrieverRAG (class in ontoaligner.aligner.rag.models) graph_postprocessor() (in module ontoaligner.postprocess.process)

H

hit_at_k() (in module ontoaligner.utils.metrics)

HolEAligner (class in ontoaligner.aligner.graph.models)

I

initialize_predicate_subsumption() (in module ontoaligner.aligner.flora.fuzzy)

is_contain_label() (ontoaligner.base.ontology.BaseOntologyParser method) items_in_owl (ontoaligner.base.encoder.BaseEncoder attribute), [1]

L

LabelMapper (class in ontoaligner.postprocess.label_mapper) LLaMALLMAdaRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) LLaMALLMAdaRetrieverICVRAG (class in ontoaligner.aligner.icv.models) LLaMALLMAdaRetrieverRAG (class in ontoaligner.aligner.rag.models) LLaMALLMBERTRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) LLaMALLMBERTRetrieverICVRAG (class in ontoaligner.aligner.icv.models) LLaMALLMBERTRetrieverRAG (class in ontoaligner.aligner.rag.models) LLM (ontoaligner.aligner.fewshot.models.FalconLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.FalconLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.GPTOpenAILLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.GPTOpenAILLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.LLaMALLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.LLaMALLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MambaLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MambaLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MistralLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MistralLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MPTLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MPTLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.VicunaLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.VicunaLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.icv.models.FalconLLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.FalconLLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.LLaMALLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.LLaMALLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.MPTLLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.MPTLLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.VicunaLLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.VicunaLLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.rag.models.FalconLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.FalconLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.GPTOpenAILLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.GPTOpenAILLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.LLaMALLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.LLaMALLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MambaLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MambaLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MistralLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MistralLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MPTLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MPTLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.VicunaLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.VicunaLLMBERTRetrieverRAG attribute)

llm_postprocessor() (in module ontoaligner.postprocess.process) load() (ontoaligner.aligner.olala.olala.OLaLaAligner method) (ontoaligner.aligner.olala.retrieval.OLaLaSBERTRetrieval method) (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) (ontoaligner.aligner.retrieval.models.AdaRetrieval method) (ontoaligner.aligner.retrieval.models.BM25Retrieval method) (ontoaligner.aligner.retrieval.models.TFIDFRetrieval method) load_from_json() (ontoaligner.base.dataset.OMDataset method) load_ontology() (ontoaligner.base.ontology.BaseAlignmentsParser method) (ontoaligner.base.ontology.BaseOntologyParser method)

M

MambaLLMAdaRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) MambaLLMAdaRetrieverRAG (class in ontoaligner.aligner.rag.models) MambaLLMBERTRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) MambaLLMBERTRetrieverRAG (class in ontoaligner.aligner.rag.models) map_subrelations() (in module ontoaligner.aligner.flora.fuzzy) match_exact_texts() (ontoaligner.aligner.olala.highprecision_matcher.OLaLaHighPrecisionMatcher method) match_property() (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner method) merge_predictions() (ontoaligner.aligner.olala.retrieval.OLaLaSBERTRetrieval method) MistralLLMAdaRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) MistralLLMAdaRetrieverRAG (class in ontoaligner.aligner.rag.models) MistralLLMBERTRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) MistralLLMBERTRetrieverRAG (class in ontoaligner.aligner.rag.models) model (ontoaligner.aligner.graph.models.BoxEAligner attribute) (ontoaligner.aligner.graph.models.CompGCNAligner attribute) (ontoaligner.aligner.graph.models.ComplExAligner attribute) (ontoaligner.aligner.graph.models.ConvEAligner attribute) (ontoaligner.aligner.graph.models.CrossEAligner attribute) (ontoaligner.aligner.graph.models.DistMultAligner attribute) (ontoaligner.aligner.graph.models.HolEAligner attribute) (ontoaligner.aligner.graph.models.MuREAligner attribute) (ontoaligner.aligner.graph.models.QuatEAligner attribute) (ontoaligner.aligner.graph.models.RotatEAligner attribute) (ontoaligner.aligner.graph.models.SEAligner attribute) (ontoaligner.aligner.graph.models.SimplEAligner attribute) (ontoaligner.aligner.graph.models.TransDAligner attribute) (ontoaligner.aligner.graph.models.TransEAligner attribute) (ontoaligner.aligner.graph.models.TransFAligner attribute) (ontoaligner.aligner.graph.models.TransHAligner attribute) (ontoaligner.aligner.graph.models.TransRAligner attribute) (ontoaligner.aligner.llm.models.AutoModelDecoderLLM attribute) (ontoaligner.aligner.llm.models.FlanT5LEncoderDecoderLM attribute) module ontoaligner.aligner.ensemble.ensemble ontoaligner.aligner.ensemble.voting.average ontoaligner.aligner.ensemble.voting.base ontoaligner.aligner.ensemble.voting.borda ontoaligner.aligner.ensemble.voting.condorce ontoaligner.aligner.ensemble.voting.reciprocal_rank_fusion ontoaligner.aligner.ensemble.voting.weighted ontoaligner.aligner.fewshot.models ontoaligner.aligner.flora.flora ontoaligner.aligner.flora.fuzzy ontoaligner.aligner.graph.models ontoaligner.aligner.icv.models ontoaligner.aligner.lightweight.models ontoaligner.aligner.llm.models ontoaligner.aligner.olala.dataset ontoaligner.aligner.olala.highprecision_matcher ontoaligner.aligner.olala.olala ontoaligner.aligner.olala.retrieval ontoaligner.aligner.propmatch.propmatch ontoaligner.aligner.rag.models ontoaligner.aligner.retrieval.models ontoaligner.base.dataset ontoaligner.base.encoder ontoaligner.base.model ontoaligner.base.ontology ontoaligner.postprocess.label_mapper ontoaligner.postprocess.process ontoaligner.postprocess.util ontoaligner.utils.metrics ontoaligner.utils.xmlify

MPTLLMAdaRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) MPTLLMAdaRetrieverICVRAG (class in ontoaligner.aligner.icv.models) MPTLLMAdaRetrieverRAG (class in ontoaligner.aligner.rag.models) MPTLLMBERTRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) MPTLLMBERTRetrieverICVRAG (class in ontoaligner.aligner.icv.models) MPTLLMBERTRetrieverRAG (class in ontoaligner.aligner.rag.models) mrr() (in module ontoaligner.utils.metrics) MuREAligner (class in ontoaligner.aligner.graph.models)

N

namespace (ontoaligner.base.ontology.BaseAlignmentsParser attribute)

O

OLaLaAligner (class in ontoaligner.aligner.olala.olala) OLaLaHighPrecisionMatcher (class in ontoaligner.aligner.olala.highprecision_matcher) OLaLaLLMDataset (class in ontoaligner.aligner.olala.dataset) OLaLaSBERTRetrieval (class in ontoaligner.aligner.olala.retrieval) OMDataset (class in ontoaligner.base.dataset) ontoaligner.aligner.ensemble.ensemble module ontoaligner.aligner.ensemble.voting.average module ontoaligner.aligner.ensemble.voting.base module ontoaligner.aligner.ensemble.voting.borda module ontoaligner.aligner.ensemble.voting.condorce module ontoaligner.aligner.ensemble.voting.reciprocal_rank_fusion module ontoaligner.aligner.ensemble.voting.weighted module ontoaligner.aligner.fewshot.models module ontoaligner.aligner.flora.flora module ontoaligner.aligner.flora.fuzzy module ontoaligner.aligner.graph.models module ontoaligner.aligner.icv.models module ontoaligner.aligner.lightweight.models module ontoaligner.aligner.llm.models module

ontoaligner.aligner.olala.dataset module ontoaligner.aligner.olala.highprecision_matcher module ontoaligner.aligner.olala.olala module ontoaligner.aligner.olala.retrieval module ontoaligner.aligner.propmatch.propmatch module ontoaligner.aligner.rag.models module ontoaligner.aligner.retrieval.models module ontoaligner.base.dataset module ontoaligner.base.encoder module ontoaligner.base.model module ontoaligner.base.ontology module ontoaligner.postprocess.label_mapper module ontoaligner.postprocess.process module ontoaligner.postprocess.util module ontoaligner.utils.metrics module ontoaligner.utils.xmlify module OntoAlignerPipeline (class in ontoaligner.pipeline) ontology_name (ontoaligner.base.dataset.OMDataset attribute), [1]

P

parse() (ontoaligner.base.encoder.BaseEncoder method) (ontoaligner.base.ontology.BaseAlignmentsParser method) (ontoaligner.base.ontology.BaseOntologyParser method) precision_score() (in module ontoaligner.utils.metrics) predict() (ontoaligner.postprocess.label_mapper.LabelMapper method)

preprocess() (ontoaligner.aligner.olala.dataset.OLaLaLLMDataset method) (ontoaligner.base.encoder.BaseEncoder method) prompt (ontoaligner.aligner.olala.dataset.OLaLaLLMDataset attribute) prompt_template (ontoaligner.base.encoder.BaseEncoder attribute), [1] PropMatchAligner (class in ontoaligner.aligner.propmatch.propmatch)

Q

quat_conj() (ontoaligner.aligner.graph.models.QuatEAligner method) quat_mul() (ontoaligner.aligner.graph.models.QuatEAligner method)

quat_similarity() (ontoaligner.aligner.graph.models.QuatEAligner method) quat_similarity_normalized() (ontoaligner.aligner.graph.models.QuatEAligner method) QuatEAligner (class in ontoaligner.aligner.graph.models)

R

rag_heuristic_postprocessor() (in module ontoaligner.postprocess.process) rag_hybrid_postprocessor() (in module ontoaligner.postprocess.process) ratio_estimate() (ontoaligner.aligner.lightweight.models.SimpleFuzzySMLightweight method) (ontoaligner.aligner.lightweight.models.TokenSetFuzzySMLightweight method) (ontoaligner.aligner.lightweight.models.WeightedFuzzySMLightweight method) recall_score() (in module ontoaligner.utils.metrics) ReciprocalRankFusionVoting (class in ontoaligner.aligner.ensemble.voting.reciprocal_rank_fusion) relation (ontoaligner.base.ontology.BaseAlignmentsParser attribute) Retrieval (ontoaligner.aligner.fewshot.models.FalconLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.FalconLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.GPTOpenAILLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.GPTOpenAILLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.LLaMALLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.LLaMALLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MambaLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MambaLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MistralLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MistralLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MPTLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.MPTLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.VicunaLLMAdaRetrieverFSRAG attribute) (ontoaligner.aligner.fewshot.models.VicunaLLMBERTRetrieverFSRAG attribute) (ontoaligner.aligner.icv.models.FalconLLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.FalconLLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.LLaMALLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.LLaMALLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.MPTLLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.MPTLLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.VicunaLLMAdaRetrieverICVRAG attribute) (ontoaligner.aligner.icv.models.VicunaLLMBERTRetrieverICVRAG attribute) (ontoaligner.aligner.rag.models.FalconLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.FalconLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.GPTOpenAILLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.GPTOpenAILLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.LLaMALLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.LLaMALLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MambaLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MambaLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MistralLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MistralLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MPTLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.MPTLLMBERTRetrieverRAG attribute) (ontoaligner.aligner.rag.models.VicunaLLMAdaRetrieverRAG attribute) (ontoaligner.aligner.rag.models.VicunaLLMBERTRetrieverRAG attribute)

retriever_postprocessor() (in module ontoaligner.postprocess.process) RotatEAligner (class in ontoaligner.aligner.graph.models)

S

SBERTLabelMapper (class in ontoaligner.postprocess.label_mapper) SBERTRetrieval (class in ontoaligner.aligner.retrieval.models) ScoreAverageVoting (class in ontoaligner.aligner.ensemble.voting.average) SEAligner (class in ontoaligner.aligner.graph.models) search_direction() (ontoaligner.aligner.olala.retrieval.OLaLaSBERTRetrieval method) seed_alignments() (ontoaligner.aligner.flora.flora.FLORAAligner method)

sentence_transformer_model (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner attribute) SimplEAligner (class in ontoaligner.aligner.graph.models) SimpleFuzzySMLightweight (class in ontoaligner.aligner.lightweight.models) SoftTfIdf (class in ontoaligner.aligner.propmatch.propmatch) source_ontology (ontoaligner.base.dataset.OMDataset attribute), [1] SVMBERTRetrieval (class in ontoaligner.aligner.retrieval.models)

T

target_ontology (ontoaligner.base.dataset.OMDataset attribute), [1] TFIDFLabelMapper (class in ontoaligner.postprocess.label_mapper) TFIDFRetrieval (class in ontoaligner.aligner.retrieval.models) threshold_finder() (in module ontoaligner.postprocess.util) tokenizer (ontoaligner.aligner.llm.models.AutoModelDecoderLLM attribute) (ontoaligner.aligner.llm.models.FlanT5LEncoderDecoderLM attribute) TokenSetFuzzySMLightweight (class in ontoaligner.aligner.lightweight.models) track (ontoaligner.base.dataset.OMDataset attribute), [1]

TransDAligner (class in ontoaligner.aligner.graph.models) TransEAligner (class in ontoaligner.aligner.graph.models) TransFAligner (class in ontoaligner.aligner.graph.models) transform() (ontoaligner.aligner.retrieval.models.AdaRetrieval method) (ontoaligner.aligner.retrieval.models.BM25Retrieval method) (ontoaligner.aligner.retrieval.models.TFIDFRetrieval method) TransHAligner (class in ontoaligner.aligner.graph.models) TransRAligner (class in ontoaligner.aligner.graph.models)

U

update_max_score_min() (in module ontoaligner.aligner.flora.fuzzy) update_predicate_subsumption() (in module ontoaligner.aligner.flora.fuzzy)

update_score_additive_min() (in module ontoaligner.aligner.flora.fuzzy) update_score_min() (in module ontoaligner.aligner.flora.fuzzy)

V

validate_predicts() (ontoaligner.postprocess.label_mapper.LabelMapper method) VicunaLLMAdaRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) VicunaLLMAdaRetrieverICVRAG (class in ontoaligner.aligner.icv.models) VicunaLLMAdaRetrieverRAG (class in ontoaligner.aligner.rag.models) VicunaLLMBERTRetrieverFSRAG (class in ontoaligner.aligner.fewshot.models) VicunaLLMBERTRetrieverICVRAG (class in ontoaligner.aligner.icv.models)

VicunaLLMBERTRetrieverRAG (class in ontoaligner.aligner.rag.models) voting_method (ontoaligner.aligner.ensemble.voting.average.ScoreAverageVoting attribute) (ontoaligner.aligner.ensemble.voting.base.BaseVoting attribute), [1] (ontoaligner.aligner.ensemble.voting.borda.BordaCountVoting attribute) (ontoaligner.aligner.ensemble.voting.condorce.CondorcetVoting attribute) (ontoaligner.aligner.ensemble.voting.reciprocal_rank_fusion.ReciprocalRankFusionVoting attribute), [1] (ontoaligner.aligner.ensemble.voting.weighted.WeightedVoting attribute)

W

WeightedFuzzySMLightweight (class in ontoaligner.aligner.lightweight.models) WeightedVoting (class in ontoaligner.aligner.ensemble.voting.weighted)

wordembedding_model (ontoaligner.aligner.propmatch.propmatch.PropMatchAligner attribute) write() (ontoaligner.aligner.flora.flora.FLORARDFWriter method)

X

xml_alignment_generator() (in module ontoaligner.utils.xmlify)